--- title: "Ecommerce Reconciliation Automation | APIWORX" description: "Automated ecommerce reconciliation across Shopify, Amazon, Wayfair, NetSuite, Brightpearl, and Sage Intacct. 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We deliver production-tested, production-tested integrations between Brightpearl, NetSuite, Shopify, Amazon, Wayfair, Sage Intacct, and 60+ other commerce, ERP, and EDI platforms — run as a managed service.", "foundingDate": "2018", "founder": { "@type": "Person", "name": "Charlie Alsmiller" }, "address": [ { "@type": "PostalAddress", "streetAddress": "1401 Lavaca Street Suite 241", "addressLocality": "Austin", "addressRegion": "TX", "postalCode": "78701", "addressCountry": "US" }, { "@type": "PostalAddress", "addressLocality": "Chennai", "addressCountry": "IN" }, { "@type": "PostalAddress", "addressLocality": "Manila", "addressCountry": "PH" }, { "@type": "PostalAddress", "addressLocality": "Buenos Aires", "addressCountry": "AR" } ] }, { "@type": "Service", "name": "Ecommerce Reconciliation Automation — Match Orders, Payouts, Inventory, and the GL Every Day", "description": "Ecommerce reconciliation is the daily process of matching ecommerce orders, payouts, refunds, chargebacks, inventory movements, and shipments to the corresponding records in the ERP and the general ledger. Ecommerce reconciliation automation runs those matches continuously, surfaces variances within hours, and assigns ownership so finance closes on time and operations catches problems before customers do.", "url": "https://apiworx.com/wedges/ecommerce-reconciliation-automation", "provider": { "@type": "Organization", "name": "APIWORX", "url": "https://apiworx.com" }, "serviceType": "Managed iPaaS", "category": "Integration Platform", "areaServed": "Worldwide", "audience": [ { "@type": "Audience", "audienceType": "Ecommerce operators" }, { "@type": "Audience", "audienceType": "IT leaders" }, { "@type": "Audience", "audienceType": "Finance leaders" } ] }, { "@type": "FAQPage", "mainEntity": [ { "@type": "Question", "name": "What is ecommerce reconciliation?", "acceptedAnswer": { "@type": "Answer", "text": "Ecommerce reconciliation is the process of matching ecommerce orders, payouts, refunds, chargebacks, inventory movements, and shipments to ERP and general ledger records, so finance can close cleanly and operations can catch failures fast." } }, { "@type": "Question", "name": "What is ecommerce reconciliation automation?", "acceptedAnswer": { "@type": "Answer", "text": "Ecommerce reconciliation automation runs reconciliation continuously instead of monthly, surfaces variances within hours, and assigns ownership for resolution. APIWORX delivers it as a managed service." } }, { "@type": "Question", "name": "Which channels does APIWORX reconcile?", "acceptedAnswer": { "@type": "Answer", "text": "Shopify, Amazon (Marketplace, FBA, Vendor), Wayfair, BigCommerce, WooCommerce, eBay, TikTok Shop, Walmart Marketplace, and 50+ other ecommerce and marketplace channels." } }, { "@type": "Question", "name": "Which ERPs does APIWORX reconcile against?", "acceptedAnswer": { "@type": "Answer", "text": "NetSuite, Brightpearl, Sage Intacct, Sage X3, Sage 100, QuickBooks, Microsoft Dynamics Business Central, Acumatica, and Epicor." } }, { "@type": "Question", "name": "How fast does reconciliation run?", "acceptedAnswer": { "@type": "Answer", "text": "APIWORX reconciliation runs daily by default and can be configured to run hourly for high-volume channels like Amazon and Shopify." } }, { "@type": "Question", "name": "Can APIWORX reconcile Amazon settlements into NetSuite or Sage Intacct?", "acceptedAnswer": { "@type": "Answer", "text": "Yes. APIWORX matches Amazon settlement reports line-by-line to NetSuite or Sage Intacct GL entries, including FBA fees, refunds, and chargebacks." } }, { "@type": "Question", "name": "What does ecommerce reconciliation automation cost?", "acceptedAnswer": { "@type": "Answer", "text": "Reconciliation is included with APIWORX managed iPaaS plans from $499/month, plus a fixed-fee implementation that scales with channel and ERP count." } } ] } ] }, { "@context": "https://schema.org/", "@type": "SoftwareApplication", "applicationCategory": "BusinessApplication", "name": "APIWORX", "image": "https://sourceforge.net/s/apiworx/icon", "description": "SourceForge Software Rating", "aggregateRating": { "@type": "AggregateRating", "ratingValue": "5", "bestRating": "5", "ratingCount": "1" } } ] --- Commerce iPaaS · 60+ operated connectors · Ops team included · Flat-fee pricing [Support](https://portal.apiworx.com)[Partners](/partners) 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Platform Connectors Flows Who We Help [MCP](/mcp)[Pricing](/pricing) [Get my free integration assessment](/free-assessment) [](/resources)[Assess](/free-assessment) [Home](/)[Wedges](/) Ecommerce Reconciliation Automation Wedge — Reconciliation # Ecommerce Reconciliation Automation — Match Orders, Payouts, Inventory, and the GL Every Day Ecommerce reconciliation is the daily process of matching ecommerce orders, payouts, refunds, chargebacks, inventory movements, and shipments to the corresponding records in the ERP and the general ledger. Ecommerce reconciliation automation runs those matches continuously, surfaces variances within hours, and assigns ownership so finance closes on time and operations catches problems before customers do. [Book a 20-minute integration scoping call](/free-assessment) ## What is ecommerce reconciliation? Ecommerce reconciliation is the daily process of matching ecommerce orders, payouts, refunds, chargebacks, inventory movements, and shipments to the corresponding records in the ERP and the general ledger. Ecommerce reconciliation automation runs those matches continuously, surfaces variances within hours, and assigns ownership so finance closes on time and operations catches problems before customers do. ## Who needs this ### Controllers and finance leaders You close the books monthly and lose days to Amazon settlement reports, Shopify payout statements, and Wayfair chargebacks that don't match the ERP. ### Ecommerce operations leaders You need to know when an order, a refund, or an inventory move failed — within hours, not at month-end. ### Founders scaling past $20M GMV Manual reconciliation breaks at scale and you need an automated layer before you hire two more accountants. ## How APIWORX solves it 1. 1 ### Map the reconciliation surface We document every channel, payout source, ERP, and GL account and define the matches that have to hold. 2. 2 ### Wire APIWORX to every system Production-tested connectors pull orders, payouts, refunds, chargebacks, inventory, and GL entries into one normalized data layer. 3. 3 ### Configure match rules and tolerances We set the matching keys, tolerances, and exception thresholds per channel and per ERP account. 4. 4 ### Run daily reconciliation APIWORX matches every transaction every day and surfaces variances in a single exception queue. 5. 5 ### Assign ownership and close Each variance is routed to an owner — ops, finance, customer support — with the source records linked. Close happens on schedule. ## APIWORX vs Manual reconciliation in Excel vs Generic iPaaS (Workato, Celigo) Honest side-by-side for buyers shortlisting their options. Feature APIWORX Manual reconciliation in Excel Generic iPaaS (Workato, Celigo) Daily reconciliation Yes — automated Monthly, manual You build it Channel coverage Shopify, Amazon, Wayfair, BigCommerce, eBay, TikTok, plus 50+ Whatever your team has time for Per-flow build ERP coverage NetSuite, Brightpearl, Sage Intacct, QuickBooks, Business Central, Acumatica Manual Per-ERP build Variance ownership and routing Built in Spreadsheets Build it yourself Time to live 4–6 weeks Forever 3–6 months Audit trail Per-record source links Lost in tabs Logs only ## Customer outcomes Customer in beauty Cut close from 14 days to 6 "We stopped chasing Amazon settlements three days into every month." Customer in housewares Caught a $180k Wayfair chargeback pattern in week one "We never would have spotted it in spreadsheets." Customer in apparel Reconciled 6 channels and 2 ERPs daily without adding finance headcount "We scaled GMV 3x without adding accountants." ## Frequently asked questions ### What is ecommerce reconciliation? Ecommerce reconciliation is the process of matching ecommerce orders, payouts, refunds, chargebacks, inventory movements, and shipments to ERP and general ledger records, so finance can close cleanly and operations can catch failures fast. ### What is ecommerce reconciliation automation? Ecommerce reconciliation automation runs reconciliation continuously instead of monthly, surfaces variances within hours, and assigns ownership for resolution. APIWORX delivers it as a managed service. ### Which channels does APIWORX reconcile? Shopify, Amazon (Marketplace, FBA, Vendor), Wayfair, BigCommerce, WooCommerce, eBay, TikTok Shop, Walmart Marketplace, and 50+ other ecommerce and marketplace channels. ### Which ERPs does APIWORX reconcile against? NetSuite, Brightpearl, Sage Intacct, Sage X3, Sage 100, QuickBooks, Microsoft Dynamics Business Central, Acumatica, and Epicor. ### How fast does reconciliation run? APIWORX reconciliation runs daily by default and can be configured to run hourly for high-volume channels like Amazon and Shopify. ### Can APIWORX reconcile Amazon settlements into NetSuite or Sage Intacct? Yes. APIWORX matches Amazon settlement reports line-by-line to NetSuite or Sage Intacct GL entries, including FBA fees, refunds, and chargebacks. ### What does ecommerce reconciliation automation cost? Reconciliation is included with APIWORX managed iPaaS plans from $499/month, plus a fixed-fee implementation that scales with channel and ERP count. ## Book a 20-minute integration scoping call. Tell us your stack. We will tell you straight whether Ecommerce Reconciliation Automation is a fit and what going live would look like. [Talk to our team](/free-assessment) [![APIWORX managed integrations logo](data:image/webp;base64,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)](/) Connect commerce, ERP, and operations into one canonical data layer with AI-powered reasoning. 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